Oliver Bodeit


(Photo © Abhinav Mishra)

 

PhD student

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phone:+49 30 2093 8694

room: 518

 

Profile

 

Oliver Bodeit studied Bioinformatics at the VU Amsterdam, with focus on developing and implementing constraint-based modelling techniques during his Master's project. In his PhD he studies cellular resource allocation phenomena by integrating existing knowledge and available data, to construct a genome-scale Resource Balance Analysis model of S.cerevisae (Baker's yeast).

 

+ - Publications Click to collapse

  1. B Goldenbogen, SO Adler, O Bodeit, JAH Wodke, A Korman, L Bonn, X Escalera-Fanjul, JEL Haffner, M Karnetzki, M Krantz, I Maintz, L Mallis, RU Moran Torres, H Prawitz, PS Segelitz, M Seeger, R Linding and E Klipp.
    Geospatial precision simulations of community confined human interactions during SARS-CoV-2 transmission reveals bimodal intervention outcomes.
    medRxiv, 2020.
    URL, DOI

  2. Björn Goldenbogen, Stephan O Adler, Oliver Bodeit, Judith A H Wodke, Ximena Escalera-Fanjul, Aviv Korman, Maria Krantz, Lasse Bonn, Rafael Morán-Torres, Johanna E L Haffner, Maxim Karnetzki, Ivo Maintz, Lisa Mallis, Hannah Prawitz, Patrick S Segelitz, Martin Seeger, Rune Linding and Edda Klipp.
    Control of COVID-19 Outbreaks under Stochastic Community Dynamics, Bimodality, or Limited Vaccination.
    Advanced Science n/a(n/a):2200088, 2022.
    URL, DOI

  3. Oliver Bodeit, Inès Ben Samir, Jonathan R Karr, Anne Goelzer and Wolfram Liebermeister.
    RBAtools: a programming interface for Resource Balance Analysis models.
    Bioinformatics Advances 3(1):vbad056, April 2023.
    URL, DOI

  4. Pattarawan Intasian, Chalermroj Sutthaphirom, Oliver Bodeit, Duangthip Trisrivirat, Ninlapan Kimprasoot, Juthamas Jaroensuk, Barbara Bakker, Edda Klipp and Pimchai Chaiyen.
    Enhancement of essential cofactors for in vivo biocatalysis..
    Faraday discussions, June 2024.
    URL, DOI

News

Our newest publications:

  1. Gabriele Schreiber, Facundo Rueda, Florian Renner, Asya Fatima Polat, Philipp Lorenz and Edda Klipp.
    Expression Dynamics and Genetic Compensation of Cell Cycle Paralogues in Saccharomyces cerevisiae..
    Cells 14, March 2025.
    URL, DOI

  1. Stephan O Adler, Anastasia Kitashova, Ana Bulović, Thomas Nägele and Edda Klipp.
    Plant cold acclimation and its impact on sensitivity of carbohydrate metabolism..
    NPJ systems biology and applications 11:28, March 2025.
    URL, DOI

  1. Pattarawan Intasian, Chalermroj Sutthaphirom, Oliver Bodeit, Duangthip Trisrivirat, Ninlapan Kimprasoot, Juthamas Jaroensuk, Barbara Bakker, Edda Klipp and Pimchai Chaiyen.
    Enhancement of essential cofactors for in vivo biocatalysis..
    Faraday discussions, June 2024.
    URL, DOI